PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g032060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 92aa    MW: 10447.7 Da    PI: 6.5061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g032060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-0616571454
                      HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      d+iN+   +L++llP+ +s+ + +  s + iLe++++YI++L
  Sopen03g032060.1 16 DEINDLVLKLQSLLPNsSSRCTTTVTSSSKILEETCNYIRKL 57
                      78999999********554666666***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.242257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-9877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-81471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRRSNNN SRFTQDEIND LVLKLQSLLP NSSSRCTTTV TSSSKILEET CNYIRKLHNE  60
VDDLSEKLSQ VLPSVDSNNI DLIHTLLSLL QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-85HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616651.15e-36PREDICTED: transcription factor ILI5-like
RefseqXP_016510911.15e-36PREDICTED: transcription factor ILI5-like
SwissprotF4JCN92e-21PRE4_ARATH; Transcription factor PRE4
TrEMBLB9R9803e-25B9R980_RICCO; DNA binding protein, putative
STRINGVIT_17s0000g05950.t013e-24(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.13e-20activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1